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The LD_DEBUG environment variable (2012)
The LD_DEBUG environment variable Originally published 23 April 2012, updated 10 September 2019 (add link to troubleshooting tool), updated 18 October 2019 (moved to Jekyll), updated 3 April 2023 with links to other tools Development of large systems using many shared (dynamically) loaded libraries can sometimes lead to some frustrating bugs that are difficult to diagnose. These bugs often arise because there a few different versions of libraries on the system and the “wrong” version gets...
ARAPDiffusion: ARAP Regularization for Diffusion-Based Deformable Shape Space Learning
arXiv:2606.06887v1 Announce Type: new Abstract: This paper introduces ARAPDiffusion, a latent diffusion model to learn the underlying continuous shape space of a deformation shape collection. The key innovation is in injecting the as-rigid-as-possible (ARAP) deformation model as regularization losses into latent diffusion (LD), releasing the requirement of having abundant 3D training data for learning generative models. In contrast to the standard LD, we show how the ARAP model can be used...
Annotation-Informed Block-Sparse Bayesian Modeling for cis-Expression Prediction
arXiv:2606.00483v1 Announce Type: cross Abstract: Genotype-based cis-expression prediction depends on accurately modeling local regulatory architecture. We present block-sparse Bayesian sparse linear mixed model (bsBSLMM), an extension of Bayesian sparse linear mixed model (BSLMM) that incorporates linkage disequilibrium (LD)-block spike-and-slab sparsity and a transcription start site (TSS)-informed SNP inclusion prior. Across 23,098 genes from GEUVADIS European-ancestry lymphoblastoid cell...
Genomic Dimensionality Bounds Mixed-Model Association Power and Fine-Mapping Resolution
Mixed-model genome-wide association studies (GWAS) behave differently in livestock than in humans, yet a unified explanation is lacking. Analyses using the full genomic relationship matrix (full-GRM; from genome-wide SNPs) yield only a few significant peaks even with hundreds of thousands of animals, whereas leave-one-chromosome-out (LOCO), numerator-relationship-matrix, and sparse-GRM approaches report many broad associations over similar data. Here we develop a framework that traces these...
How I Get Free Traffic from ChatGPT in 2025 (AIO vs SEO)
Three weeks ago, I tested something that completely changed how I think about organic traffic. I opened ChatGPT and asked a simple question: "What's the best course on building SaaS with WordPress?" The answer that appeared stopped me cold.
Defence ministry looking at ‘penalties on HAL’ for delays in delivery of Tejas jets
Defence ministry looking at ‘penalties on HAL’ for delays in delivery of Tejas jets NEW DELHI: The defence ministry is looking to impose penalties on defence PSU Hindustan Aeronautics Limited (HAL) over continued delays in the delivery of Tejas Mk1A fighter aircraft, defence sources said on Monday. The delivery issue was reviewed during a meeting chaired by defence minister Rajnath Singh on Monday.
MetaConfigurator: AI-Assisted RDF Authoring from JSON Data
arXiv:2606.07094v1 Announce Type: new Abstract: Scientific workflows increasingly generate structured JSON data that is easy to exchange but difficult to interpret consistently across systems due to lacking semantic interoperability. While JSON Schema ensures structural validation, it provides no native support for Linked Data semantics. This paper presents an RDF Authoring View extending the open-source JSON Schema editor MetaConfigurator, enabling researchers to transform existing JSON,...
GPU accelerated population genetics statistics using pg_gpu
Population genetics summary statistics-- diversity, divergence, linkage disequilibrium, selection scans, and dimensionality reduction-- are fundamental across human, agricultural, and ecological genomics. As whole-genome sequencing datasets have grown to hundreds of thousands of individuals, the cost of computing these statistics on conventional CPU implementations has become a major bottleneck: windowed scans of a single chromosome arm can take hours to days, and computation of pairwise...