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Related Articles from SNS

Scalable in vivo cardiac functional genomics with compressed AAV-Perturb-seq reveals a common mitochondrial response to perturbation

Efficient identification of new targets to treat human disease requires a scalable way to link genotype to phenotype directly in the target organ. Pooled CRISPR screening with single-cell RNA sequencing as a readout (Perturb-seq) has emerged as a method for functional genomics but is typically applied in vitro and is limited in scale. Here, we combine in vivo Perturb-seq via adeno-associated virus (AAV)-mediated delivery with a statistical framework allowing for signal deconvolution after...

bioRxiv 5d ago

Exploration via linearly perturbed loss minimisation

arXiv:2311.07565v3 Announce Type: replace Abstract: We introduce exploration via linear loss perturbations (EVILL), a randomised exploration method for structured stochastic bandit problems that works by solving for the minimiser of a linearly perturbed regularised negative log-likelihood function. We show that, for the case of generalised linear bandits, EVILL reduces to perturbed history exploration (PHE), a method where exploration is done by training on randomly perturbed rewards. In...

arXiv CS 5d ago

Optimizing Irreversible Perturbations of the Unadjusted Langevin Algorithm

Announce Type: new Abstract: Irreversible perturbations accelerate the convergence of Langevin dynamics, breaking detailed balance while preserving the invariant measure. The design of optimal irreversible perturbations has been studied in the continuous-time Gaussian setting, but extensions to non-Gaussian target distributions, and the impact of time discretization on the design of optimal perturbations, have not been well understood. Numerical discretizations of Langevin dynamics introduce...

arXiv CS 5d ago

NAPPure: Adversarial Purification for Robust Image Classification under Non-Additive Perturbations

arXiv:2510.14025v2 Announce Type: replace Abstract: Adversarial purification has achieved great success in combating adversarial image perturbations, which are usually assumed to be additive. However, non-additive adversarial perturbations such as blur, occlusion, and distortion are also common in the real world. Under such perturbations, existing adversarial purification methods are much less effective since they are designed to fit the additive nature.

arXiv CS 8d ago

Impact of a Soft Wearable Back-Support Device on Postural Stability during Trip-Like Perturbations

arXiv:2606.02888v1 Announce Type: new Abstract: The effectiveness of a soft wearable back-support device in enhancing postural stability was investigated under trip-like perturbations using two experimental paradigms: perturbed standing and perturbed walking. Healthy subjects completed trials under three different back-support conditions: no device, device worn with low stiffness, and device activated with high stiffness. Whole-body stability was quantified using the minimum Margin of...

arXiv CS 7d ago

Knowledge Graphs and Reasoning LLMs for Finding Simple Yet Effective Transcriptomic Perturbation Predictors

arXiv:2606.08816v1 Announce Type: new Abstract: Predicting the effect of an unseen gene knockout perturbation on transcriptomic gene expression remains a highly challenging problem for virtual cell models. Recent progress has been made by leveraging biological knowledge graphs to provide a notion of similar perturbation, allowing for improved extrapolation beyond the set of training perturbations. In this work, we demonstrate that the simplest model to leverage these assumptions - a...

arXiv CS 1d ago

Non-Parametric Probabilistic Robustness: A Conservative Risk Estimator under Unknown Perturbation Distributions

Announce Type: replace Abstract: Deep learning (DL) models, despite their remarkable success, remain vulnerable to small input perturbations that can cause erroneous outputs, motivating the recent proposal of probabilistic robustness (PR) as a complementary alternative to adversarial robustness (AR). However, existing PR formulations assume a fixed and known perturbation distribution, an unrealistic expectation in practice. To address this limitation, we propose non-parametric probabilistic...

arXiv CS 9d ago

Tuning long-range interactions in Sr Rydberg atoms: the effect of series perturbations

arXiv:1505.07152v3 Announce Type: replace Abstract: We investigate the effect of series perturbation on the second-order dipole-dipole interactions between strontium atoms in the $5sns({^1}S_0)$ and $5snp({^1}P_1)$ Rydberg states as a means of engineering long-range interactions between atoms. The series perturbation in these atoms enables modifying the strength and the sign of the interaction by varying the principal quantum number $n$ of the Rydberg electron. We utilize experimentally...

arXiv Physics 5d ago

Repurposing Adversarial Perturbations for Continual Learning: From Defense to Active Alignment

Announce Type: new Abstract: In dynamic environments, large language models need to keep adapting to new tasks, but continual learning often suffers from forgetting, limited transfer, and vulnerability to adversarial perturbations. To address this, we present AdvCL, which repurposes adversarial perturbations as a geometric control signal for stable continual adaptation.

arXiv CS 8d ago

Multimodal physical evidence uncovers interpretable gene regulatory networks for perturbation prediction

Gene regulatory networks govern cell fate transitions through dynamic causal mechanisms. Since exhaustively mapping this vast perturbation space experimentally is prohibitive, scalable computational models are essential. Yet, current frameworks fall short because they infer statistical co-expression rather than physical mechanisms, remain blind to non-canonical regulators lacking classical DNA-binding motifs, and fail to generalize across unseen perturbation factors or cell lines.

bioRxiv 3d ago