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AdventML: Advanced Enzyme Temperature Prediction with Transformer-Based Embeddings and Resampling Strategies

Accurate prediction of enzymes' optimal catalytic temperature (Topt) is crucial in biotechnology, as enzymes with extreme Topt values are highly desirable for reactions at extreme temperatures and for their general stability. However, experimental determination of Topt is costly, labor-intensive, and time-consuming. Meanwhile, existing computational methods suffer from small and imbalanced datasets, suboptimal predictions at extreme temperatures, and insufficient validation.

bioRxiv 7d ago

EnzOracle: Mechanism-aware prediction of enzyme environmental adaptation via a classification-guided mixture-of-experts framework

Industrial biocatalysis increasingly requires enzymes capable of operating under extreme physicochemical conditions, yet most natural sequence data reflect adaptation to mild environments, leading conventional predictive models to suffer from regression-to-the-mean effects in extremophilic regimes. Here we present EnzOracle, a classification-guided mixture-of-experts framework that enables distribution-aware prediction of enzyme melting temperature (Tm), optimal catalytic temperature (Topt),...

bioRxiv 4d ago