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Treat Traffic Like Trees: A Semantic-Preserving Hierarchical Graph-Based Expert Framework for Encrypted Traffic Analysis

arXiv:2606.04517v1 Announce Type: new Abstract: Graph-based deep learning methods have been widely employed in encrypted traffic analysis to exploit latent correlations across different granularities. However, while complex preprocessing pipelines and sophisticated model structures often achieve strong performance, they may obscure inherent protocol semantics during representation learning. Moreover, the hierarchical structure of protocol layers and their corresponding fields, defined by...

arXiv CS 6d ago

Temporal matching in trees

arXiv:2606.06439v1 Announce Type: new Abstract: We study maximum matching problems in temporal graphs whose underlying graph is a tree. We consider two temporal models. In a $\Delta$-matching, selected time edges sharing an endpoint must have time ticks differing by at least $\Delta$. In a $\gamma$-matching, the selected objects are blocks of $\gamma$ consecutive appearances of the same underlying edge.

arXiv CS 5d ago

CTS-Bench: Benchmarking Graph Coarsening Trade-offs for GNNs in Clock Tree Synthesis

arXiv:2602.19330v2 Announce Type: replace Abstract: Graph Neural Networks (GNNs) are increasingly explored for physical design analysis in Electronic Design Automation, particularly for modeling Clock Tree Synthesis behavior such as clock skew and buffering complexity. However, practical deployment remains limited due to the prohibitive memory and runtime cost of operating on raw gate-level netlists. Graph coarsening is commonly used to improve scalability, yet its impact on CTS-critical...

arXiv CS 1d ago

On the complexity of computing Strahler numbers

arXiv:2512.19060v2 Announce Type: replace Abstract: It is shown that the problem of computing the Strahler number of a binary tree given as a term is complete for the circuit complexity class uniform $\mathsf{NC}^1$. For several variants, where the binary tree is given by a pointer structure or in a succinct form by a directed acyclic graph or a tree straight-line program, the complexity of computing the Strahler number is determined as well. We show that the problem of deciding whether a...

arXiv CS 5d ago

TaxoFormer: Hierarchical Transformer for Predicting the Full Taxonomic Lineage of Protein Sequences

Predicting labels in massive, hierarchically structured output spaces is a core challenge in machine learning. In this work, we use the problem of predicting the full taxonomic lineage of a protein from its sequence as a case study for this challenge. We introduce TaxoFormer, an architecture whose primary contribution is a structured tokenization scheme that losslessly represents the entire NCBI phylogenetic tree, a graph with over 1.3 million nodes using a compact vocabulary of just 15,000...

bioRxiv 1d ago

InquiTree: Evaluating AI Agents in the Scientific Inquiry Loop with Paper-Derived Research Trees

Announce Type: new Abstract: While LLM-based agents are increasingly used in scientific workflows, it remains unclear whether they are truly qualified for the dynamic and uncertain process of discovery. Existing static evaluations often conflate genuine reasoning with rote memorization. We introduce InquiTree, a diagnostic environment that formalizes scientific inquiry as interactive Research Trees: directed acyclic graphs capturing the logical dependencies among hypothesis formulation,...

arXiv CS 1d ago

Statistical Guarantees for Reasoning Probes on Looped Boolean Circuits

arXiv:2602.03970v3 Announce Type: replace-cross Abstract: We study the statistical behavior of reasoning probes in a stylized model of iterative computation inspired by neural algorithmic reasoning. The underlying computation is given by a looped Boolean circuit whose graph is a perfect $\nu$-ary tree ($\nu\ge 2$), with outputs recursively fed back as inputs across computation rounds. A probe observes a sampled subset of internal nodes and seeks to infer the latent operation at each node,...

arXiv CS 8d ago

Parent-Hash DAG: A Cost Analysis of Constant-Time Append for On-Chain Registries

Announce Type: new Abstract: Provenance trees are append-only directed acyclic graphs of artifact registrations anchored on a public blockchain, recently introduced as the data substrate of operator-gated provenance infrastructure. Their defining data-structural pattern is a parent-hash directed acyclic graph (PHDAG), in which each append performs a constant number of storage writes to previously-untouched slots. This pattern has not previously been isolated as a standalone primitive,...

arXiv CS 1d ago

Terminal Steiner tree problem : Complexity and Algorithms

arXiv:2606.02325v1 Announce Type: new Abstract: Given a connected graph $G$ and a terminal set $R \subseteq V(G)$, the Steiner tree problem (ST) asks for a tree that spans all of $R$ with at most $r$ vertices from $V(G)\backslash R$, for some integer $r\geq 0$. It is known from (Garey et al.,1977 ) that ST is NP-complete.

arXiv CS 8d ago

Energy-Efficient Aggregation and Minimum-Degree Spanning Trees in Radio Networks

Announce Type: new Abstract: We study the aggregation problem in synchronous multi-hop radio networks with $O(\log n)$-bit messages and no collision detection. Each node initially holds a value, and the goal is to compute a global aggregate such as the sum of all values. Aggregation tasks arise naturally in wireless sensor networks, where nodes are often battery-powered and radio activity is the dominant source of energy consumption.

arXiv CS 9d ago