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Related Articles from SNS

Dynamic Gating Mechanism of the b0,+AT-Mediated Arg Transport: Insights from ASMD Simulations

Heteromeric amino acid transporters (HATs) mediate essential amino acid flux across membranes, but the molecular dynamics of substrate translocation remain poorly defined for many family members. Here, using conventional and adaptive steered molecular dynamics (cMD and ASMD) simulations, we identify residue W230 in the b0,+AT transport channel as a dynamic gate that regulates arginine (Arg) influx through side chain flipping. By integrating dynamic network analysis with dynamical...

bioRxiv 1d ago

In-Expectation Convergence of Stochastic Gradient Methods under Heavy-Tailed Noise

Announce Type: cross Abstract: Many stochastic gradient methods are believed not to converge when the noise in stochastic gradients has only a finite $p$-th moment for $p\in\left(1,2\right)$, a setting known as the heavy-tailed noise assumption. However, some recent studies have found that Stochastic Gradient Descent ($\textsf{SGD}$), without any modification to its update rule, can surprisingly converge in expectation for convex problems with bounded domains, highlighting the potential of...

arXiv CS 8d ago