PAG
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PAG-Agent: a biologist-oriented research assistant for context-aware pathway-level analysis and interpretation
Pathway analysis is a critical step for translating gene-level omics results into biological mechanisms, yet existing workflows often leave researchers with long lists of statistically significant pathways that are difficult to interpret, validate, and connect to experimental context. We developed PAG-Agent, a biologist-oriented virtual research assistant that integrates pathway-level statistical analysis, context-aware biological interpretation, literature-supported reasoning, and...
PARSE: Part-Aware Relational Spatial Modeling
Announce Type: replace Abstract: Inter-object relations underpin spatial intelligence, yet existing representations -- linguistic prepositions or object-level scene graphs -- are too coarse to specify which regions actually support, contain, or contact one another, leading to ambiguous and physically inconsistent layouts. To address these ambiguities, a part-level formulation is needed; therefore, we introduce PARSE, a framework that explicitly models how object parts interact to determine...