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CaliPPer: quantifying, predicting and improving AI model performance for binding prediction

arXiv:2606.07258v1 Announce Type: new Abstract: Binding prediction models accelerate therapeutic antibody and TCR discovery, but their performance on new datasets is unpredictable, often leading to low discovery rates. Density-ratio methods (PAPE, M-CBPE) provide label-free performance estimation for binary classification, but their assumptions and aggregate-only outputs limit binding prediction on neoepitopes, antigen variants and chemical scaffolds. Here we present CaliPPer (Calibration...

arXiv CS 2d ago

Data-Enabled Predictive Control with Predictive Adaptive Line-of-Sight Guidance for 3-D Path Following of Autonomous Underwater Vehicles

arXiv:2510.25309v3 Announce Type: replace Abstract: This paper presents a fully data-driven 3-D path-following framework for autonomous underwater vehicles (AUVs), a representative class of underwater field robotics, based on Data-Enabled Predictive Control (DeePC). The approach eliminates explicit hydrodynamic modeling by exploiting measured input-output trajectories to predict and optimize future system behavior. Classic DeePC is employed for heading control, while a cascaded DeePC...

arXiv CS 8d ago

Missing Links in Public Email and Covert Networks: A Comparative Evaluation of Link Prediction, Hyperlink Prediction, and ERGM Estimation

arXiv:2605.22606v2 Announce Type: replace Abstract: We study missing-link inference in partially observed networks by systematically comparing dyadic link prediction (LP) with hyperlink prediction (HP) and an estimation-based ERGM comparator. LP serves as the primary baseline, using classical heuristics computed on the observed graph. HP extends this framework by scoring candidate higher-order structures (cliques) via lifted dyadic scores and via the CHEbyshev Spectral HyperlInk pREdictor...

arXiv CS 2d ago

CASCADE Conformal Prediction: Uncertainty-Adaptive Prediction Intervals for Two-Stage Clinical Decision Support

arXiv:2605.20468v2 Announce Type: replace Abstract: Effective medication management in Parkinson's Disease (PD) is challenging due to heterogeneous disease progression, variable patient response, and medication side effects. While AI models can forecast levodopa equivalent daily dose (LEDD) as a measure of medication needs, standard uncertainty quantification often fails to communicate the reliability of these predictions, treating high and low confidence clinical decisions identically. We...

arXiv CS 6d ago

Imagine Before You Predict: Interleaved Latent Visual Reasoning for Video Event Prediction

Announce Type: new Abstract: Video event prediction (VEP) requires models to infer unobserved future states from partial video evidence. Existing video MLLMs usually verbalize intermediate future reasoning in text space: once visual evidence is verbalized, fine-grained motion, geometry, and interaction cues can be lost, leading to plausible but visually ungrounded hallucinations. We introduce Future-L1, an interleaved latent visual reasoning framework that lets an MLLM alternate between...

arXiv CS 5d ago

Enhancing Conformal Prediction via Class Similarity

Announce Type: replace Abstract: Conformal Prediction (CP) has emerged as a powerful statistical framework for high-stakes classification applications. Instead of predicting a single class, CP generates a prediction set, guaranteed to include the true label with a pre-specified probability. The performance of different CP methods is typically assessed by their average prediction set size.

arXiv CS 2d ago

Fundamental bounds on efficiency-confidence trade-off for transductive conformal prediction

Announce Type: replace Abstract: Transductive conformal prediction addresses the simultaneous prediction for multiple data points. Given a desired confidence level, the objective is to construct a prediction set that includes the true outcomes with the prescribed confidence. We demonstrate a fundamental trade-off between confidence and efficiency in transductive methods, where efficiency is measured by the size of the prediction sets.

arXiv CS 8d ago

Explaining a probabilistic prediction on the simplex with Shapley compositions

arXiv:2408.01382v3 Announce Type: replace Abstract: Originating in game theory, Shapley values are widely used for explaining a machine learning model's prediction by quantifying the contribution of each feature's value to the prediction. This requires a scalar prediction as in binary classification, whereas a multiclass probabilistic prediction is a discrete probability distribution, living on a multidimensional simplex. In such a multiclass setting the Shapley values are typically computed...

arXiv CS 6d ago

Mexico zoo animals predict World Cup winners

Mexico zoo animals predict World Cup winners Mexico zoo animals predict World Cup winners Animals at Guadalajara Zoo in Mexico are making their own predictions for the 2026 FIFA World Cup. Elephants, gorillas, a puma and giraffes picked winners from a selection of upcoming matches, continuing a World Cup tradition made famous by Paul the Octopus, who correctly predicted 12 of 14 results at the 2010 tournament. Published On 6 Jun 2026

Al Jazeera 4d ago

Neural Change Prediction: Relating Software Changes to Their Effects and Vice Versa

Announce Type: new Abstract: Much of software development revolves around understanding the relationship between software changes and their effects. If we could learn and predict those relationships, such predictions could benefit several areas of software engineering. While recent advances in artificial intelligence have shown great promise in software engineering tasks, predicting the semantics of code without executing it remains a big challenge.

arXiv CS 7d ago