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Cohort-HMM marker recruitment with per-OG orthology QC for phylogenomic supermatrices
OrthoFinder's all-vs-all DIAMOND step systematically misses single-copy orthogroups (SC OGs) at deep taxonomic divergence: a marker recovered cleanly within a tightly defined cohort is dropped when the same marker is searched against phylum-broad metagenome-assembled genome (MAG) sets, because pairwise sequence similarity falls below DIAMOND's detection threshold even when the underlying ortholog is present. The result is biased dropout - supermatrices that retain genomes near the cohort but...
Quantum Cut Sparsifiers
arXiv:2606.09728v1 Announce Type: cross Abstract: In this paper, we continue a line of research initiated by Basu, Brakensiek, and Putterman [2026] studying the sparsifiability of Hamiltonians. We focus particularly on the sparsifiability of the widely-studied Quantum Cut (QC) Hamiltonians. Our main result is that in an $n$-qubit system, any $n$-qubit QC Hamiltonian can be sparsified to $\widetilde{O}(n /\varepsilon^2)$
Joint Optimization of Qubit Leasing and Quantum Circuit Distribution
arXiv:2606.00501v1 Announce Type: cross Abstract: We consider an agent, who would like to execute a given quantum circuit using resources leased from a set of quantum computers (QCs) connected by a quantum network. For this purpose, the agent needs to make the following four key decisions: (i) how many qubits to lease from each QC, (ii) at which QCs to store different circuit qubits in different time slots, (iii) at which QC to execute each gate in the circuit, and (iv) how to move qubits...
Learning quality scores for chromatin accessibility bigWig tracks using Machine Learning
High-throughput chromatin accessibility assays such as bulk and single-cell ATAC-seq have generated large collections of processed signal tracks in bigWig format, which are widely used for visualisation, data integration, and Machine Learning (ML)-based analyses. Despite their central role, systematic quality control (QC) frameworks operating directly at the level of bigWig signal tracks remain underdeveloped. This gap limits the ability to assess data reliability and hampers robust...
Sensor Quality Control and Annealing Studies of HGCAL Silicon Sensors
arXiv:2606.07278v1 Announce Type: new Abstract: We summarise Sensor Quality Control (SQC) results of non-irradiated silicon sensors for the CMS HGCAL detector, as well as the first detailed annealing campaign with a wafer-scale 120\,\textmu m (Epitaxial) sensor exposed to \(2\times10^{15}\)\,\si{n_{eq}/cm^2} at the Rhode Island Nuclear Science Center (RINSC). For the non-irradiated sensors, we present an overview of the QC workflow developed for HGCAL, including automated handling of vendor...
Local-available quantum correlation swapping in one-parameter X states
arXiv:2507.23142v4 Announce Type: replace-cross Abstract: Although introduced for entanglement, quantum repeaters and swapping protocols have been analyzed for other quantum correlations (QC), such as quantum discord. In 2015, Mundarain and Ladr\'on de Guevara [Quantum Inf. Process.
An affordable, long-lasting AirTag alternative is $15 right now
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FrontierCode
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The Best USB-C Cables (2026): for Smartphones, Tablets, and Laptops
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Optical genome mapping identifies source-associated structural variant differences across early-passage human iPSCs
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