RMSF
No mentions found
This entity hasn't been tracked yet, or Iris is still building its knowledge base.
Related Articles from SNS
When Does Structure Help? The Information Bonus of AlphaFold2 Representations over Protein Language Models
arXiv:2606.04228v1 Announce Type: new Abstract: AI scientist systems increasingly choose biological foundation models before they choose experiments. In protein pipelines, this creates a concrete engineering and scientific question: when is the cost of structural inference worth paying over a cheaper sequence-only model? We introduce the information bonus (IB), a task-level metric that measures the linearly accessible advantage of frozen single-sequence AlphaFold2 Evoformer representations...
VelocityFM: Short-Horizon Protein Trajectory Prediction via Flow Matching in Velocity Space
Protein dynamics is fundamentally a trajectory prediction problem, but molecular dynamics (MD) simulation remains expensive and static structure predictors do not model time-ordered motion. We present VelocityFM, a short-horizon protein trajectory predictor that applies rectified flow matching in velocity space over residue frames and torsions. The model combines six Invariant Point Attention (IPA) blocks with a two-layer per-residue temporal self-attention encoder, and is trained on 710...